diff --git a/dlls/fltmgr.sys/Makefile.in b/dlls/fltmgr.sys/Makefile.in
index 87fe4c31328..cbe124c2480 100644
--- a/dlls/fltmgr.sys/Makefile.in
+++ b/dlls/fltmgr.sys/Makefile.in
@@ -1,7 +1,5 @@
 MODULE    = fltmgr.sys
-EXTRADLLFLAGS = -Wl,--subsystem,native
-
-EXTRADLLFLAGS = -mno-cygwin
+EXTRADLLFLAGS = -mno-cygwin -Wl,--subsystem,native
 
 C_SRCS = \
 	main.c