diff --git a/configure b/configure
index 8cdd4210f55..5b48965e10a 100755
--- a/configure
+++ b/configure
@@ -13853,8 +13853,6 @@ esac
 
 ac_config_commands="$ac_config_commands include/stamp-h"
 
-ac_config_files="$ac_config_files Makefile"
-
 
 ALL_MAKEFILE_DEPENDS="# Makefile dependencies
 Makefile: Makefile.in Make.rules config.status"
@@ -14660,6 +14658,9 @@ wine_fn_config_tool tools/winegcc
 wine_fn_config_tool tools/wmc
 wine_fn_config_tool tools/wrc
 
+ac_config_files="$ac_config_files Makefile"
+
+
 test -n "$DLLEXT" || ALL_PROGRAM_BIN_INSTALL_DIRS=""
 
 cat >confcache <<\_ACEOF
@@ -15356,7 +15357,6 @@ do
   case $ac_config_target in
     "include/config.h") CONFIG_HEADERS="$CONFIG_HEADERS include/config.h" ;;
     "include/stamp-h") CONFIG_COMMANDS="$CONFIG_COMMANDS include/stamp-h" ;;
-    "Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;;
     "dlls/wineps.drv/generic.ppd") CONFIG_LINKS="$CONFIG_LINKS dlls/wineps.drv/generic.ppd:dlls/wineps.drv/generic.ppd" ;;
     "fonts/marlett.ttf") CONFIG_LINKS="$CONFIG_LINKS fonts/marlett.ttf:fonts/marlett.ttf" ;;
     "fonts/symbol.ttf") CONFIG_LINKS="$CONFIG_LINKS fonts/symbol.ttf:fonts/symbol.ttf" ;;
@@ -15374,6 +15374,7 @@ do
     "dlls/Makedll.rules") CONFIG_FILES="$CONFIG_FILES dlls/Makedll.rules" ;;
     "dlls/Makeimplib.rules") CONFIG_FILES="$CONFIG_FILES dlls/Makeimplib.rules" ;;
     "programs/Makeprog.rules") CONFIG_FILES="$CONFIG_FILES programs/Makeprog.rules" ;;
+    "Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;;
 
   *) as_fn_error "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
   esac
diff --git a/configure.ac b/configure.ac
index bf6693470eb..31c71706041 100644
--- a/configure.ac
+++ b/configure.ac
@@ -2132,7 +2132,6 @@ dnl **** Generate output files ****
 AH_TOP([#define __WINE_CONFIG_H])
 
 AC_CONFIG_COMMANDS([include/stamp-h], [echo timestamp > include/stamp-h])
-AC_CONFIG_FILES([Makefile])
 
 WINE_CONFIG_SYMLINK(dlls/wineps.drv/generic.ppd)
 WINE_CONFIG_SYMLINK(fonts/marlett.ttf)
@@ -2703,6 +2702,8 @@ WINE_CONFIG_TOOL(tools/wmc)
 WINE_CONFIG_TOOL(tools/wrc)
 dnl End of auto-generated output commands
 
+AC_CONFIG_FILES([Makefile])
+
 dnl Don't install in bin dir for Windows build
 test -n "$DLLEXT" || ALL_PROGRAM_BIN_INSTALL_DIRS=""